Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903962.1_cds_XP_016454128.1_48186
CDS Infomation

[gene=LOC107778389] [db_xref=GeneID:107778389] [protein=serine/threonine-protein kinase EDR1-like isoform X2] [protein_id=XP_016454128.1] [location=join(6673..6753,8164..8355,8578..8831,10293..10388,12595..12681,13424..13529,14662..14950,16148..16271,16396..16415,16640..16796,18099..18387,18498..18570,18791..18873)] [gbkey=CDS]
Sequence

ATGTTAAAACAGCTGGCCCTCACTTTAGTGAAAGGATTGCGTTCTACTCCAGCTGTAGTG
GTGAAGAAGATTGCAGGGTTGGTTTGTGATTTTTATAAGCATCCAAAGTACAAGTCAACT
CATGTGAGTGGTACACTTGAGGAGGTCTCACATGCTTTGGGTAGTCAAGGAATCCATATG
CTCTGCCAAATAAAGGACGGGTCCTGTCATTCTCGAGCAATCTTGTTCAAAGTTCTTGCA
GACACTGTGGGCCTGGAGTGCAAGCTGATTGTGGGTTTTCCAAGAGGAGGAGCGCTGGAG
CGCACAGATTCGTCTAAGCACATCTGTGTGACAGTCATTCTGGATTCGGTGGAACTACTT
GTTGACCTTATGCATTATCCTGGAAAGCTGTTTCCCTGTTCAACAAAGCAGCGAAATCGC
TCTCATTTCTTTGGTGAGAGTGATTCTATAGAAACTGATTCATATAACTCACCGATGGAT
CCCATTAGCCCTACCTGTTTCAGTTCCGACTATAGTGGCACTGGAAGTCCAGAGCATCCT
CTCTTCCGAGGACCTGGGAGATCCATTCTTGGTGGTCGCGCACTTTCTTTCAAGGACTGC
ACCTATGATGTTACTTCTTCAAGGTCTGCTGGTGCATCACCTTTACACACTCGTAGAAGA
AGACGAAGATCCATTAGCATGATTCCGGAGATTGGTGATGACATTGTAAGGGTTGTTCGG
GAAATGAATGCATCTATGAAGAAAAATCATCTTTCAGGGGGACAAGCAACATTTGATTTG
TCTACAAGGAAAAGGGAAGATAATTCTGGTAATCAAGTGCTGAATTTCCATCCAGATGAC
CTAAATACACGAAATGGTGAAAAAGGTCAAGCACAGCATTTTCATGGAAAGTGTTTGGCA
TCTGACAAAGCAATCTCCCTGCCTTCATCCCCGCACCGGACCTATGGTAGAGGCAATGCA
GCAGGAATTTTTGGCAGTCCTGATATGATGTCAAGATTGGAAAAAGTGATAGAATCTTCA
AGGATCCTCAACAAACCATTGTTACCATTTGATGAATGGAACATTGATTTCTCTGAAATC
ACCATTGGAGCACGTGTTGGAATTGGGTTTTTTGGAGAAGTCTTTCGGTGTATTTGGAAT
GGAACAGAGGTTGCAGTTAAGGTTTTCCTAGAACAAGACTTGAGTGAAGAAAACATTGAA
GATTTTGCCAATGAAATATCCATCCTGAGCCGCATTCGCCACCCAAATGTAATCTTGTTC
CTCGGTGCTTGCACAACTCCCCCTCGTTTATCCGTGATTACCGAATTCATGGAGATGGGA
TCCCTGTATCATCTGATCCATGTAAGTGGACAGAAGAATAACCTCAGCTGGCAAAGGAGA
TTGAAAATGCTTTGCGATATATGCAGGGGGCTGCTGTGTATACATAGGATGAAAATCGTG
CATCGTGATCTAAAGAGTGGAAACTGCCTTGTAAATAAACACTACAAAGTCAAGATCTGT
GATTTTGGACTATCGCGGTTACTGATTTCAACGCCCATGCAAGATTCTTCCTCAGCAGGT
ACACCAGAATGGATGGCCCCAGAGCTTATTCGTAATGAACCTTTCACCGAAAAATGCGAC
ATTTTTAGTTTTGGGGTCATAATATGGGAACTATACACACTCAAAAAACCATGGGAAGGT
GTTCCATCTATCCAGGTCGTATACGCTGTTGCTAATGATGGAAAACGGCTAGAAATTCCT
GAAGGTCCTCTAGGAAAACTAATTTCAGATTGCTGGGCAGAACCAGATGAACGGCCTAGT
TGTGAGGAAATCTTATCACGGCTACAAGAATGTAGGCCTTCTGCCAGTTGA

Peptide Sequence

PEP ID

XP_016454128.1
PEP Infomation

PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Nicotiana tabacum]
Sequence

MLKQLALTLVKGLRSTPAVVVKKIAGLVCDFYKHPKYKSTHVSGTLEEVSHALGSQGIHM
LCQIKDGSCHSRAILFKVLADTVGLECKLIVGFPRGGALERTDSSKHICVTVILDSVELL
VDLMHYPGKLFPCSTKQRNRSHFFGESDSIETDSYNSPMDPISPTCFSSDYSGTGSPEHP
LFRGPGRSILGGRALSFKDCTYDVTSSRSAGASPLHTRRRRRRSISMIPEIGDDIVRVVR
EMNASMKKNHLSGGQATFDLSTRKREDNSGNQVLNFHPDDLNTRNGEKGQAQHFHGKCLA
SDKAISLPSSPHRTYGRGNAAGIFGSPDMMSRLEKVIESSRILNKPLLPFDEWNIDFSEI
TIGARVGIGFFGEVFRCIWNGTEVAVKVFLEQDLSEENIEDFANEISILSRIRHPNVILF
LGACTTPPRLSVITEFMEMGSLYHLIHVSGQKNNLSWQRRLKMLCDICRGLLCIHRMKIV
HRDLKSGNCLVNKHYKVKICDFGLSRLLISTPMQDSSSAGTPEWMAPELIRNEPFTEKCD
IFSFGVIIWELYTLKKPWEGVPSIQVVYAVANDGKRLEIPEGPLGKLISDCWAEPDERPS
CEEILSRLQECRPSAS

Transcript Sequence

Gene sequence data has not been registered.